Kudou Shin'ichi is a famous 17-year-old high school detective who helps the police solve cases. While investigating a mysterious organization, he was knocked unconscious by one of them, and an experimental poison was forced down his throat. Instead of killing him, however, the drug shrunk him into a little kid. In order to prevent the men in black who did this to him from hurting his friends and family, he changed his name to Edogawa Conan and took on the identity of a gifted primary school student who solves mysteries and crimes through reasoning, logic, the help of his friends and some nifty gadgets Dr. Agasa Hiroshi invented for him. Now, he lives with his childhood friend, Mouri Ran, and her father, detective Mouri Kogorou, without them knowing about his situation, and carries on his investigation of the organization that is still out to kill him.

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Side story: Meitantei Conan: Tokei Jikake no Matenrou
Side story: Meitantei Conan: Baker Street no Bourei
Side story: Meitantei Conan: Tengoku e no Count Down
Side story: Meitantei Conan: Meikyuu no Crossroad
Side story: Meitantei Conan: Gin'yoku no Magician
Side story: Meitantei Conan: Juuyonbanme no Target
Side story: Meitantei Conan: Seikimatsu no Majutsushi
Side story: Meitantei Conan: Hitomi no Naka no Ansatsusha
Side story: Meitantei Conan: Suihei Senjou no Strategy
Side story: Meitantei Conan: Conan vs Kid vs Yaiba
Side story: Meitantei Conan: 16-nin no Yougisha!?
Side story: Meitantei Conan: Conan to Heiji to Kieta Shounen
Side story: Meitantei Conan: Conan to Kid to Crystal Mother
Side story: Meitantei Conan: Target wa Kogorou!! Shounen Tanteidan Maruhi Report
Side story: Meitantei Conan: Tantei-tachi no Requiem
Side story: Meitantei Conan: Kieta Dia o Oe! Conan & Heiji VS Kid!
Side story: Aoyama Goushou Tanpenshuu
Side story: Meitantei Conan: Konpeki no Jolly Roger
Side story: Meitantei Conan: Agasa kara no Chousenjou! Agasa vs Conan & Shounen Tanteidan
Side story: Meitantei Conan: Senritsu no Full Score
Side story: Meitantei Conan: Joshikousei Tantei Suzuki Sonoko no Jikenbo
Side story: Meitantei Conan: Conan vs Kid - Shark & Jewel
Side story: Meitantei Conan: Conan vs Kid - Shikkoku no Sniper
Side story: Meitantei Conan: Shikkoku no Chaser
Other: Lupin Sansei vs Meitantei Conan
Side story: Meitantei Conan: 10 Nengo no Stranger
Side story: Aoyama Goushou Tanpenshuu 2
Side story: Meitantei Conan Magic File 3: Shin'ichi to Ran Mahjong Pai to Tanabata no Omoide
Side story: Meitantei Conan: Tenkuu no Lost Ship
Side story: Meitantei Conan Magic File 2: Kudou Shin'ichi Nazo no Kabe to Kuro Lab Jiken
Same setting: Magic Kaito
Side story: Meitantei Conan: Kid in Trap Island
Side story: Meitantei Conan Magic File 4: Osaka Okonomiyaki Odyssey
Side story: Meitantei Conan: Chinmoku no Quarter
Side story: Meitantei Conan Magic File 2011: Niigata - Tokyo Omiyage Capriccio
Side story: Meitantei Conan: London kara no Maru Hi Shirei
Side story: Meitantei Conan vs. Wooo
Side story: Meitantei Conan: 11-ninme no Striker
Side story: Meitantei Conan: Excalibur no Kiseki
Prequel: Meitantei Conan Bonus File: Fantasista no Hana
Side story: Meitantei Conan: Zekkai no Private Eye
Side story: Meitantei Conan: Ijigen no Sniper
Side story: Edogawa Conan Shissou Jiken: Shijou Saiaku no Futsukakan
Same setting: Magic Kaito 1412
Side story: Meitantei Conan: Gouka no Himawari
Side story: Toubousha Mouri Kogorou
Side story: Meitantei Conan: Junkoku no Nightmare
Side story: Meitantei Conan: Nazo no Suisei Kaijuu o Oe!
Side story: Meitantei Conan: Kara Kurenai no Love Letter
Alternative version: Meitantei Conan: Episode One - Chiisaku Natta Meitantei
Side story: Meitantei Conan: Zero no Shikkounin
Side story: Meitantei Conan: Hoshikage no Magician
Side story: Meitantei Conan: Konjou no Fist
Side story: Meitantei Conan: Hiiro no Dangan
Side story: Meitantei Conan: Hiiro no Fuzai Shoumei
Side story: Meitantei Conan: Shakunetsu no Galaxy Railroad
Side story: Meitantei Conan: Tantei-tachi no Starry Night
Side story: Meitantei Conan: Hannin no Hanzawa-san
Side story: Meitantei Conan: Zero no Tea Time
Side story: Meitantei Conan: Halloween no Hanayome
Side story: Meitantei Conan: Kurogane no Submarine
Side story: Meitantei Conan: Haibara Ai Monogatari - Kurogane no Mystery Train
Side story: Meitantei Conan: 100-man Dol no Michishirube
Summary: Meitantei Conan vs. Kaitou Kid
Side story: Meitantei Conan: Sekigan no Flashback
Side story: Meitantei Conan: Highway no Datenshi